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COVID-19 - QuickStart Tutorials (BALF)

  • LIANA x Tensor-cell2cell Quickstart (Python)
  • LIANA x Tensor-cell2cell Quickstart (R)

Lupus - QuickStart Tutorials (PBMCs)

  • LIANA x Tensor-cell2cell Quickstart (Python)
  • LIANA x Tensor-cell2cell Quickstart (R)

Python tutorials

  • 1. Preprocessing expression data
  • 2. Ligand-Receptor Inference
  • 3. Generating a 4D-Communication Tensor from computed communication scores
  • 4. Running Tensor-cell2cell to perform a tensor factorization
  • 5. Downstream Analyses of Factor Loadings
  • 6. Pathway Enrichment of LR loadings

R tutorials

  • 1. Preprocessing expression data
  • 2. Ligand-Receptor Inference
  • 3. Generating a 4D-Communication Tensor from computed communication scores
  • 4. Running Tensor-cell2cell to perform a tensor factorization
  • 5. Downstream Analyses of Factor Loadings
  • 6. Pathway Enrichment of LR loadings

Further Information

  • Frequently Asked Questions

Python Supplements

  • S1. Batch Correction
  • S2. Interoperability
  • S3A. Score Consistency
  • S3B. Decomposition Consistency between Score Types
  • S4. Identify CCC patterns from spatial transcriptomics

R Supplements

  • S1. Batch Correction
  • S2. Interoperability
  • S3. Score Consistency
LIANA x Tensor-cell2cell
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© Copyright 2023, Hratch Baghdassarian, Daniel Dimitrov, Erick Armingol, et al. Revision 564ba53d.

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